| Announcements |
Program |
Workshop on
Bifurcation Analysis and its Applications
Montreal, Canada, July 7-10, 2010

Part of a Lorenz manifold in the preturbulent regime (by Hinke Osinga)
Announcements
- [New] [September 22, 2010]
- Workshop Pictures.
- Some of the workshop
presentations are available for downloading/viewing. In such cases, the
presentation title is linked to its presentation file in PDF.
- [New] [July 01, 2010]
The program has been updated.
- [April 25, 2010]
The program has been updated.
- [March 05, 2010]
The program has been updated.
- [October 31, 2009] Please watch this section for news on accommodation,
confirmed speakers and deadlines.
Outline
Welcome to the BAA10 Home Page! This four-day workshop will include
introductory and specialized presentations on the development of algorithms for
the analysis of dynamical systems and various applications. In some sense, it is
the continuation of highly successful meetings focused on bifurcation analysis
in Amsterdam, Bielefeld, Bristol, Ghent, Seville, Utrecht and, last year,
Milan.
Organizers
Eusebius Doedel and Lennaert van Veen.
Principal Themes
- Day 1: Algorithms for ODEs and Conservative Systems.
- Day 2: Algorithms for PDEs and Fluid Dynamics.
- Day 3: Biomedical Applications.
- Day 4: Industrial Applications and Mechanical Systems.
Hotel
Le Méridien Versailles.
Location
Engineering and Visual Arts Building (corner rue Ste.-Catherine O. and rue
Guy), Concordia University, Montreal, Canada.
Room EV3.309. (After taking the two stairways from the entrance hall to the third floor, turn right,
take the first turn left, and then the first turn right.
Transportation
A taxi stand is in front of the airport; a taxi ride to the Hotel Meridien
Versailles can reach C$40, especially during rush hour. There is also an
airport bus service to
the downtown Berri-UQAM metro station, from where one can take the metro to the
Guy-Concordia metro station, close to the hotel.
Participation
The workshop is open to the interested public. In order to ensure the workshop
room has enough seats, we kindly request that participants register in advance,
and before June 28, by sending an email to E. J. Doedel (doedel@cse.concordia.ca). A name tag, which
can
be picked up at the entrance of the lecture room, should be worn during the
workshop.
Programme
The titles and speakers are given below. The abstracts are included in the
details. Please select/deselect
the link for the details to show/hide the abstract, respectively.
Please check this page shortly before the workshop, as there may be late
changes due to travel schedules, etc.
Day/Date: Wednesday, July 7. Theme: Algorithms for ODEs and Conservative Systems
10:00-10:30 Coffee
Talks
Time |
Title |
Details |
Speaker |
10:30-11:00 |
Initialization and continuation of homoclinic orbits to equilibria
in MatCont |
Details
Yu.A. Kuznetsov (Utrecht University, The Netherlands)
Joint work with V. De Witte and W. Govaerts (Gent, Belgium), and M. Friedman
(Huntsville, Alabama)
Abstract:
New functionalities of MatCont (a MATLAB continuation package for the
interactive numerical study of parameterized systems of smooth ODEs) related to
the codimension-one orbits homoclinic to hyperbolic and non-hyperbolic
equilibria will be presented. The continuation of such orbits is implemented
using the CIS-algorithm, with the Ricatti equation included in the defining
system. It is possible to initiate the homoclinic orbits of both types
interactively, within a GUI, starting from an equilibrium point and using a
homotopy method.
All known codimension-two homoclinic bifurcations can be detected and located
during the continuation. Test functions for the inclination-flip bifurcations
are implemented in a new and more efficient way.
Examples illustrating the homotopy method in the cases of 1D- and 2D-unstable
invariant manifolds will be presented.
|
Yuri Kuznetsov |
11:00-11:30 |
Continuation and bifurcation in conservative systems |
Details
Jorge Galán
(Joint work with F. J Muñoz Almaraz, E. Freire, A. Vanderbauwhede, and E. J.
Doedel)
Abstract:
The usual procedure to study the dynamical behaviour of systems with conserved
quantities and/or symmetries is to reduce the dimension of the problem and
include the integrals of motion as explicit parameters. Some years ago, the
authors proposed an alternative method that instead adds an additional
"unfolding" term to the equations and treats the conserved quantities as
internal parameters, i.e. not present in the equations. In this talk we review
some of the applications of the method paying special attention to
the numerical implementation for the continuation of periodic orbits.
|
Jorge Galán |
11:30-12:00 Coffee, Cake, and Discussion
Time |
Title |
Details |
Speaker |
12:00-12:30 |
The role of global manifolds in the transition to chaos in the
Lorenz system |
Details
Hinke Osinga
Abstract:
The Lorenz system still fascinates many people because of the
simplicity of the equations that generate such complicated dynamics on
the famous butterfly attractor. This talk addresses the role of the
stable and unstable manifolds in organising the dynamics more
globally. A main object of interest is the stable manifold of the
origin of the Lorenz system, also known as the Lorenz manifold. This
two-dimensional manifold and associated manifolds of saddle periodic
orbits can be computed accurately with numerical methods based on the
continuation of orbit segments, defined as solutions of suitable
boundary value problems. This allows us to study bifurcations of
global manifolds as the Rayleigh parameter is changed. We show how
the entire phase space of the Lorenz system is organised and how the
manifolds change dramatically during the transition to chaotic dynamics.
|
Hinke Osinga |
12:30-13:00 |
Computing global dynamics of multiparameter systems |
Details
Bill Kalies
Abstract:
A generally applicable method for the efficient computation of a database of
global dynamics of a multiparameter dynamical system is introduced. An outer
approximation of the dynamics for each subset of the parameter range is computed
using rigorous numerical methods and is represented by means of a directed
graph. The dynamics is then decomposed into the recurrent and gradient-like
parts by fast combinatorial algorithms and is classified via Morse
decompositions. These Morse decompositions are compared at adjacent parameter
sets via continuation to detect possible changes in the dynamics. The Conley
index is used to study the structure of isolated invariant sets associated with
the computed Morse decompositions and to detect the existence of certain types
of dynamics. The method is illustrated with an application to the
two-dimensional,
density-dependent, Leslie population model.
|
Bill Kalies |
13:00-17:00 Lunch and Discussions
Time |
Title |
Details |
Speaker |
17:00-17:30 |
Breakdown of Analyticity: From rigorous results to numerics |
Details
Renato Calleja, McGill University
Abstract:
We formulate and justify rigorously a numerically efficient criterion for the
computation of the analyticity breakdown of quasi-periodic solutions in
Symplectic maps and 1-D Statistical Mechanics models. Depending on the physical
interpretation of the model, the analyticity breakdown may correspond to the
onset of mobility of dislocations, or of spin waves (in the 1-D models) and to
the onset of global transport in symplectic twist maps. The criterion we propose
here is based on the blow-up of Sobolev norms of the hull functions. The
justification of the criterion suggests fast numerical algorithms that we have
implemented in several examples.
|
Renato Calleja |
Demonstration
Time |
Title |
Details |
Demonstrator |
17:30-18:00 |
Quality of numerics: TIDES. Application to the Lorenz and Rössler models |
Details
Roberto Barrio, Departamento de Matemática Aplicada, Universidad de Zaragoza, E-50009 Zaragoza, Spain
(Joint work with Fernando Blesa, Marcos Rodríguez, and Sergio Serrano)
Abstract:
In the numerical study of Dynamical Systems we have to deal with Differential
Equations, and we have to solve them with different goals. Sometimes we have to
integrate very long time and we need speed, or we need to study the evolution of
partial derivatives along the solution or we deal with chaotic problems and we
need high precision to follow the orbit, 100 digits, 1000 digits, or more. In
all these cases we can use the new integrator tool TIDES
[1,3], acronym of Taylor Series Integrator of Differential EquationS. The
Taylor series method applied to the integration of Ordinary Differential
Equations can be adapted easily to these special demands which hardly can be
obtained using other standard methods such as Runge-Kutta.
In this new software we have implemented all these features and we have
created the program providing easy-to-use interfaces. A simple line in Mathematica
generates automatically the necessary files in C or FORTRAN
to solve the problem. Besides, changing a simple option and linking with the
library -lTIDES
also provided in this software we can integrate without difficulties partial
derivatives and/or arbitrary high precision via the multiple precision library MPFR [6].
|
Roberto Barrio |
18:00-18:30 Discussions and Demonstrations
Day/Date: Thursday, July 8. Theme: Algorithms for PDEs and Fluid Dynamics
09:00-09:30 Coffee
Talks
Time |
Title |
Details |
Speaker |
09:30-10:00 |
Lagrangian Coherent Structures, Hyperbolicity and Lyapunov
exponents: A Unified View |
Details
George Haller
Abstract:
We review the fundamental physical motivation behind the definition of
Lagrangian Coherent Structures (LCS) and show how it leads to the concept of
finite-time hyperbolicity in non-autonomous dynamical systems. Using this
concept of hyperbolicity, we obtain a self-consistent criterion for the
existence of attracting and repelling material surfaces in unsteady fluid flows
and in other non-autonomous dynamical systems. The existence of LCS is often
postulated in terms of features of the Finite-Time Lyapunov Exponent (FTLE)
field associated with the system. As simple examples show, however, the FTLE
field does not necessarily highlight LCS, or may highlight structures that are
not LCS. Under appropriate nondegeneracy conditions, we
show that ridges of the FTLE field indeed coincide with LCS in volume-preserving
flows. For general flows, we obtain a more general scalar field whose ridges
correspond to LCS. We illustrate the results on applications to atmospheric and
oceanic flow data.
|
George Haller |
10:00-10:30 |
Equivariant PDEs and the freezing method |
Details
Wolf-Jürgen Beyn
Abstract:
We consider semilinear parabolic systems in one and two space dimensions
which exhibit localized moving patterns, such as traveling, rotating and spiral
waves. These patterns may be viewed as relative equilibria of an equivariant
time-dependent PDE. We discuss nonlinear stability and instability of such
relative equilibria in terms of (generally continuous) spectra of
linearizations.
The results are closely related to a numerical approach, called the freezing
method or the method of slices. It uses equivariance of the PDE and transforms
the given system into a partial differential algebraic equation (PDAE) which is
subsequently discretized by truncation to a bounded domain with finite boundary
conditions. The approach allows to freeze the target pattern in a comoving frame
while simultaneously providing information on the motion of the group variables.
For several examples we show how Lyapunov stability of the resulting PDAE and
its numerical analog relate to stability with
asymptotic phase for the original pattern.
|
Wolf-Jürgen Beyn |
10:30-11:00 Coffee, Cake, and Discussion
Time |
Title |
Details |
Speaker |
11:00-11:30 |
Secondary flow transitions in a differentially heated rotating
channel of fluid |
Details
Greg Lewis
(Joint work with Matt Hennessy)
Abstract:
A preliminary investigation of the secondary fluid flow transitions that
occur in an O(2)-symmetric differentially heated rotating periodic channel is
presented. In the channel, the primary transition occurs when a time-independent
flow that is uniform along the channel bifurcates to a stationary wave flow.
Using numerical continuation, we search for the parameter values at which
transitions occur from this wave solution.
We discuss a strategy for computing steady solutions of the three dimensional
Navier-Stokes equations in the Boussinesq approximation and for determining flow
transitions. In particular, the Navier-Stokes equations are solved using a
velocity-vorticity method in combination with a second-order centered
finite-difference scheme on an unstaggered and nonuniform grid. The resulting
nonlinear system of algebraic equations is solved using Newton's method. GMRES
with block Jacobi preconditioning is used to iteratively solve the large sparse
linear systems that result from the discretization.
|
Greg Lewis |
11:30-12:00 |
Localized edge states and homoclinic snaking in plane Couette flow |
Details
Tobias Schneider
(Joint work with John F. Gibson and John Burke)
Abstract:
Inducing turbulence in linearly stable shear flows such as pipe and plane
Couette flow requires perturbations of finite amplitude. The shape and size of
critical perturbations can be determined using the edge tracking algorithm (PRL
96, 174101 (2006); PRL 99, 034502 (2007)). For small, periodically continued
domains both critical
perturbations and the turbulent dynamics itself have recently been linked to
exact equilibrium and traveling wave solutions of the Navier-Stokes equations.
In large domains, where localized perturbations are observed to induce spatially
localized patches of turbulence which slowly invade the surrounding laminar
flow, these periodic solutions can however not capture the full spatio-temporal
dynamics but suggest the existence of their localized counterparts. We here
examine a new class of localized solutions to plane Couette flow that under
continuation in Reynolds number exhibit a sequence of saddle-node bifurcations
strikingly similar to the "homoclinic snaking" phenomenon observed the
Swift-Hohenberg equation. These localized solutions originate from bifurcations
off the spatially periodic equilibria discovered by Nagata
and others and retain their physical structure, demonstrating the relevance of
exact solutions to turbulent flows in spatially extended domains.
|
Tobias Schneider |
12:00-14:30 Lunch and Discussions
Time |
Title |
Details |
Speaker |
14:30-15:00 |
A low-dimensional model of separation bubbles |
Details
Rouslan Krechetnikov
Abstract:
In this work, motivated by the problem of model-based predictive control of
separated flows, we identify the key variables and the requirements on a
model-based observer and construct a prototype low-dimensional model to be
embedded in control applications.
Namely, using a phenomenological physics-based approach and dynamical systems
and singularity theories, we uncover the low-dimensional nature of the complex
dynamics of actuated separated flows and capture the crucial bifurcation and
hysteresis inherent in separation phenomena. This new look at the problem
naturally leads to several important implications, such as, firstly, uncovering
the physical mechanisms for hysteresis, secondly, predicting a finite amplitude
instability of the bubble, and, thirdly, to new issues to be studied
theoretically and tested experimentally.
|
Rouslan Krechetnikov |
15:00-15:30 |
Computation of invariant tori by Newton-Krylov methods in
large-scale dissipative systems |
Details
Juan Sánchez (Joint work with M. Net and C. Simó)
Abstract:
Invariant tori arise in general continuous or discrete dynamical systems,
usually, when a branch of periodic orbits loses stability at a Neimark-Sacker
bifurcation, although in Hamiltonian systems they appear typically around a
(totally or partially) elliptic fixed point, periodic orbit or lower dimensional
torus.
A method to compute invariant tori in high-dimensional systems, obtained as
discretizations of PDEs, by continuation and Newton-Krylov methods will be
described. Invariant tori are found as fixed points of a generalized Poincare
map so that the dimension of the system of equations to be solved is that of the
original system of ODEs. Therefore there is no prohibitive increase in the size
of the problem. Due to the dissipative nature of the systems studied, the
convergence of the linear solvers is extremely fast. The computation of periodic
orbits inside the Arnold's tongues is also considered.
The thermal convection of a binary mixture of fluids, in a rectangular
cavity, has been used to test the method. The branch of tori obtained, starts at
a Neimark-Sacker bifurcation, and ends at a pitchfork bifurcation. Later on, the
stable branches of invariant tori undergo a cascade of period-doubling
bifurcations leading to chaos. In this case, as typically happens, only a finite
number of period doublings is found before the chaotic range is reached.
Although the method is suitable for stable tori, we have been able to compute an
small branch of unstable invariant tori.
|
Juan Sánchez |
15:30-16:00 |
Coherent structures emerging from turbulence in the nonlocal complex
Ginzburg-Landau equation |
Details
Robert Hölzel
Abstract:
The nonlocal complex Ginzburg-Landau equation (NCGLE), an extension of the
complex Ginzburg-Landau equation (CGLE), is a normal-form approach modelling the
nonlocal migration coupling that arises in electrochemical systems [V.
Garcia-Morales and K. Krischer, Phys. Rev. Lett. 100, 054101 (2008)]. A
peculiarity of migration coupling is that the range of the coupling can be tuned
experimentally. The limit of negligible coupling range corresponds to diffusion
coupling, and in this limit, the NCGLE becomes the CGLE.
We show with numerical simulations of the NCGLE that with increasing range of
the nonlocal coupling coherent patterns develop in the turbulent parameter
region of the CGLE, and WE present a bifurcation analysis of the NCGLE with the
coupling range as main bifurcation parameter. We discuss in detail a series of
bifurcations involving heteroclinic connections of stationary states and of
limit cycles.
|
Robert Hölzel |
16:00-16:30 Drinks, Snacks, and Discussion
Demonstration
Time |
Title |
Details |
Demonstrator |
16:30-17:00 |
Using OOMPH-LIB to study bifurcation phenomena in fluid flows |
Details
Andrew Hazel
Abstract:
I shall demonstrate the use of spatial adaptivity, continuation and
bifurcation detection within OOMPH-LIB, an open-source, C++ software library
(developed jointly with Matthias Heil) designed for the robust solution of
multi-physics problems, see http://www.oomph-lib.org. Examples will be presented
from an ongoing project (joint with Rich Hewitt and Phil Haines) to investigate
the relationship between the nonlinear behaviour of similarity solutions to the
Navier--Stokes equations and the corresponding
full solutions in finite domains.
Fluid flows often exhibit features on many different length-scales. A uniform
numerical discretisation based on the smallest length-scale in the problem can
be extremely inefficient if the small-scale features are localised in space. One
solution, known as spatial adaptivity, is to solve the problem with a relatively
coarse discretisation and then to use an error estimator to select the regions
that contain fine-scale features. The discretisation in the selected regions is
refined and the problem is solved again. The process continues iteratively until
the error estimate is below a prescribed tolerance, or the computer runs out of
memory! If the error estimator is "good", the final discretisation will be
"adapted" to the particular problem and usually contains far fewer degrees of
freedom than the uniform discretisation required to achieve equivalent accuracy.
When assessing the stability of a fluid flow and/or seeking
bifurcations the associated eigenfunctions of the linearised system must also be
accurately resolved. In many cases, particularly near Hopf bifurcations of
reasonably large frequency, the flow and the eigenfunction can have quite
different spatial structures and using a discretisation based on the flow alone
can lead to large errors in the location of the bifurcation.
|
Andrew Hazel |
17:00-18:00 Discussions and Demonstrations
Day/Date: Friday, July 9. Theme: Biomedical Applications
09:00-09:30 Coffee
Talks
Time |
Title |
Details |
Speaker |
09:30-10:00 |
New insights into dynamic bifurcation problems with application to
neuronal and chemical systems |
Details
Steven Baer
Abstract:
When a parameter slowly ramps through a Hopf bifurcation, stability loss is
delayed considerably when compared to classical static theory. Inherent to
biological, chemical, and physical systems, but often overlooked or
misunderstood in the literature are nonlinear ramp problems where a parameter
slowly accelerates or de-accelerates through the bifurcation point. In this talk
I will briefly review, from a neuroscience perspective, the importance of the
dynamic bifurcation problem. I will then present recent results that show,
numerically and analytically, how slow nonlinear ramps can significantly
increase or decrease the onset threshold, changing profoundly our understanding of stability
loss delay in dynamic bifurcation problems. I will apply the results to membrane
accommodation in nerves, the formation of pacemakers in the Belousov-Zhabotinsky
reaction, and neuronal elliptic bursting. At the end to the talk I will discuss
ongoing research and several open problem areas.
|
Steven Baer |
10:00-10:30 |
Correlates between bifurcations and physiological attributes in the
cortex: a dynamicist approach |
Details
Federico Frascoli
(Joint work with L. van Veen, D. T. J. Liley, and I. Bojak)
Abstract:
Mean field models (MFMs) of cortical tissues focus on salient, average
features of populations of neurons, with the scope of understanding the
foundations of electrical brain activity. One of the common aspects of MFMs is
the presence of a high dimensional parameter space, which tries to capture the
essential neurobiological attributes of the cortex.
The parameter space of a MFMs of brain electrocortical activity is here
investigated, in relation to the effects in brain dynamics induced by general
anesthetics (GAs). It is possible to discover meaningful correlations through
the study of bifurcations of the anesthetized cortex. The generality of our
approach is also well suited to probe the parameter spaces of other existing
MFMs, in search of correlations between physiological attributes and dynamical
responses.
In particular, we show the presence of correlates among measurable attributes
of the brain, EEG spectral powers and dynamical patterns in the model. These
links are not accessible by standard linear or nonlinear parameter analyses, but
emerge when the parameter space is partitioned according to the dynamical
responses to GAs. These responses belong to two archetypal categories or
"families", which are investigated and characterized in depth. It also emerges
that families can be influenced dramatically by the actions of exhogeneous
stimuli, like those driven by the thalamic input.
The complexity of oscillatory activity within each family is not equivalent,
with diverse repertoires of sustained orbits. Distributions of some cortical
attributes are also antithetic, with some parameters exerting a strong control
on the dynamics of the reaction to GAs.
Finally, the role of inhibition in affecting the nature of the overall cortical
activity appears to be very strong.
|
Federico Frascoli |
10:30-11:00 Coffee, Cake, and Discussion
Time |
Title |
Details |
Speaker |
11:00-11:30 |
Polyrhythms in dynamical models of multi-functional central pattern
generator networks |
Details
Andrey Shilnikov
Abstract:
A Central Pattern Generator is a neural network controlling various vital
repetitive locomotive functions including respiration and walking of humans,
swimming and crawling of leeches etc. This talk is focused on modeling
polyrhythmic dynamics in a multi-functional CPG, that is able to generate
multiple rhythms associated with distinct types of locomotive activity. We
describe synergetic mechanisms of the emergence of several synchronous behaviors
in in mutually inhibitory motifs being a network's building block.
|
Andrey Shilnikov |
11:30-12:00 |
Phase resetting biological oscillations - a topological theorem vs.
the real world |
Details
Leon Glass
Joint work with Michael Guevara, Alvin Shrier, Art Winfree, Thomas Gedeon,
Mark Josephson, Trine Krogh-Madsen, Eusebius Doedel, Bart Borek and Bart Oldeman
Abstract:
One of the classic ways to characterize biological or other oscillators is to
measure the resetting of the oscillation as a function of the phase of the
stimulus. To do this, we define the phase transition curve which gives the new
phase of the oscillation as a function of the phase of the stimulus. Provided
the stimulus leaves the oscillator in the same basin of attraction for all
stimuli phases, using topological arguments, the phase transition curve should
be a continuous map of the unit circle onto itself. Careful experimental tests
of the predictions are rare. However, in the 1980s, Michael Guevara did an
experiment that appeared to contradict the topological result. I will consider
mathematical and experimental issues involved with the resetting of oscillations
associated with limit cycles in ordinary differential equations representing
biological oscillations, partial differential equations representing the
propagation of an excitation wave in a one dimensional ring of excitable medium,
and partial differential equations representing a one dimension excitable medium
in which a pacemaker is embedded. These problems are relevant to problems
associated with the initiation and termination of serious cardiac arrhythmias.
|
Leon Glass |
12:00-14:30 Lunch and Discussions
Time |
Title |
Details |
Speaker |
14:30-15:00 |
Dynamical models for the cell cycle |
Details
Willy Govaerts
(Joint work with Charlotte Sonck)
Abstract:
Basic knowledge of the cell cycle of various types of cells consists of the
substances involved in the process (cyclins, APC's etcetera) and the regulatory
network.
Dynamical systems models based on this regulatory network are fairly recent,
and they are not the only possible approach. Competing models use logical
dynamic modeling, a simpler approach that in some cases is quite successful by
showing that most trajectories funnel into a path which steps through the cell
cycle in a robust way.
On the other hand, models based on differential equations allow to use
mathematical tools such as bifurcation theory and numerical continuation under
parameter variation. In this way, multistability, periodic behaviour etc. can be
derived and studied in a fairly standard way.
A survey of the already impressive literature was recently published by A.
Csikasz-Nagy ("Computational systems biology of the cell cycle", Briefings in
Bioinformatics, Vol. 10 no 4, 424-434). The leading group appears to be that of
John. J. Tyson and Bela Novak. Among other things, they built the most detailed
model so far of cell-cycle regulation by
describing the control network of budding yeast /Saccharomyces cerevisiae./
In most cases, these models exhibit an even richer bifurcation structure than
is usually taken into account, e.g. Takens-Bogdanov points, periodic
oscillations internally in the G1 state of the system etc. It is not always
obvious how much of this is relevant for the applications.
We discuss a computational and bifurcation study of the budding yeast model
that includes a few phenomena that were so far not discussed in this context.
This includes the existence of different limit cycles, born at different Hopf
points that (approximately) merge in a single bigger limit cycle and a rather
unexpected relation between the growth
rate of the cell and the mass increase after DNA-replication.
We further discuss the implications of the funneling effect for the cell
cycle as a boundary value problem, and the computation of this cycle as the
fixed point of a map.
|
Willy Govaerts |
15:00-15:30 |
Modelling with Mass-Action Kinetics and Beyond |
Details
Markus Kirkilionis
Abstract:
Mass-action kinetics is a powerful tool to describe events created by
collision of molecules or individuals in a well-mixed environment giving them
locally the same probability to meet each other. Moreover this probability is
only dependent on the concentration of the mutual partners. Mass action systems
can be found in chemistry, cell biology, but also game theory and economics.
Mathematically this gives rise to dynamical systems of a special type, more
specific of polynomial type. I will give an overview how this property can be
used to determine different types of bifurcations, for example the occurrence of
bistability, or oscillations via a Hopf bifurcation. All tools will be borrowing
methods from algebraic geometry. Finally I will give an outlook what usually
goes wrong in the modelling part while using mass-action kinetics if biochemical
or cellular molecular events are considered.
|
Markus Kirkilionis |
15:30-16:00 |
Torus canards in a reduced neuron model |
Details
Mark Kramer
Abstract:
Neurons can exhibit a variety of dynamical states, including rapid spiking
and bursting. We describe these two states --- and their transitions --- in a
reduced mathematical model of a cerebellar Purkinje cell. We find at the
transition a canard phenomena that follows temporarily a branch of repelling
limit cycles. To explore these dynamics, we have recently developed a simpler
mathematical model of the canard phenomena, which we will also discuss.
|
Mark Kramer |
16:00-16:30 Drinks, Snacks, and Discussion
Demonstration
Time |
Title |
Details |
Demonstrator |
16:30-17:00 |
Numerical continuation of orbit segments |
Details
Bart Oldeman
Abstract:
The method of successive continuation of orbit segments (also known as the
homotopy method) is a very powerful method for determining how a trajectory
varies as initial conditions change. Instead of shooting from a set of initial
conditions we pose a boundary value problem (BVP). First we compute one orbit
segment that satisfies one initial condition, which can actually be done by
continuation in its 'period' T, from 0 until the orbit satisfies a certain end
condition, for instance, for its length, time, or its intersection with a plane.
Next the initial condition of the orbit can be varied, keeping the end condition
from the first step.
Keeping the initial and end conditions well-posed the orbit is then continued
as a whole, which means that all points on the orbit are taken into account, and
not just the initial conditions. For example, sometimes the initial conditions
might not vary numerically but the segment changes a lot at its end or
elsewhere, and this method has no problems with that.
This method can be implemented in standard continuation software such as
AUTO, and has been used to compute, for example, the Lorenz manifold. I show
here its application to compute a simple unstable manifold and a phase resetting
curve for a Van der Pol-style system.
|
Bart Oldeman |
17:00-18:00 Discussions and Demonstrations
Day/Date: Saturday, July 10. Theme: Industrial Applications and Mechanical
Systems
09:00-09:30 Coffee
Talks
Time |
Title |
Details |
Speaker |
09:30-10:00 |
Task embedding -- a paradigm for modular construction of composite
continuation problems and an example realization in a multi-point,
boundary-value-problem, collocation toolbox for the continuation of sets
of constrained orbit segments |
Details
Harry Dankowicz
Abstract:
A central theme in the recent development of the continuation package COCO by
Frank Schilder and the speaker is the construction of extended continuation
problems that afford run-time flexibility in deploying a particular covering
algorithm and selectively constraining the continuation. The corresponding
mathematical formulation naturally supports the idea of task embedding, a shared
responsibility for constructing the extended continuation problem across several
toolboxes. According to this notion, functionality afforded by distinct
toolboxes should be formulated in such a way that it can be combined to solve
composite continuation problems without code modification or reimplementation.
As argued in this talk, such an extended formulation enables innovative
computations that are not supported in a similar way as 'built-in' functionality
by any existing core implementations.
Specifically, this talk illustrates the notion of task embedding through the
implementation of a COCO-compatible collocation toolbox for multi-point,
boundary-value problems, which supports the general-purpose parameter
continuation of sets of constrained orbits segments, such as i) segmented
trajectories in hybrid dynamical systems, for example, mechanical systems with
impacts, friction, and switching control, ii) homoclinic orbits represented by
an equilibrium point and a finite-time trajectory that starts and ends near this
equilibrium point, and iii) collections of trajectories that represent
quasi-periodic invariant tori. The collocation algorithm allows for
segment-dependent meshing and non-trivial boundary conditions involving internal
mesh points and includes a full discretization
of the corresponding variational equations, making it straightforward to track
solution branches associated with critical combinations of eigenvalues.
|
Harry Dankowicz |
10:00-10:30 |
Bifurcations with impact and friction; why it is easier to drag
chalk than push it |
Details
Alan Champneys
(Joint work with Arne Nordmark and Harry Dankowicz)
Abstract:
Newtonian impact and coulomb friction, when treated seperately are known to lead
to consistent formulations in terms of piecewise-smooth dynamical systems. Nevertheless,
so-called discontinuity-induced bifurcations such as grazing and sliding bifurcations can occur.
This talk considers what happens when friction is taken into account during an impact
event. The analysis is restricted to 2D, where the canonical example is that of a
slender body allowed to contact a rigid frictional surface (a piece of chalk
on a blackboard). First it is shown how to derive consistent impact laws that
generalise the coefficient of resitution law. These lead to the possibilities of
discontinuity-induced bifurcations as the sequences of sticking or slipping changes
during an impact event. Next it is shown that for contacting motion the so-called
Painleve paradox of non-uniqueness can be resolved by smoothing and passing to the
limit. However, there remains the possibility of reverse chatter, where infinite numbers
of impacts accumulate in reverse time, that cannot be ruled out at transition points between
stick and slip. The existence of such motion shows the fundamental non-uniqueness in
forward time simulations of rigid formulations of impact with Coulomb friction.
|
Alan Champneys |
10:30-11:00 |
Dynamics of aircraft as ground vehicles |
Details
Bernd Krauskopf, University of Bristol
(Joint work with James Rankin, Mark Lowenberg, and Mathieu Desroches)
Abstract:
Aircraft are meant to fly, but they also need to operate efficiently
and safely on the ground. As ground vehicles, commercial aircraft are quite
special; in particular, they feature a tricycle configuration
and very strong deformations of the tyres.
The talk will demonstrate how the standard ground manoeuvre of
aircraft turning can be studied by means of a bifurcation analysis of a
nonlinear aircraft model. In particular, it is shown that the
phenomenon of a sudden loss of tyre holding force when entering a spin is
mathematically a canard explosion.
|
Bernd Krauskopf |
11:00-11:30 Coffee, Cake, and Discussion
Time |
Title |
Details |
Speaker |
11:30-12:00 |
Formation of asteroids: a simple mechanical model for complicated
shapes |
Details
Gabor Domokos
(Joint work with A. A. Sipos, Gy Szabo, and P. Varkonyi)
Abstract:
While the number of asteroids with known shapes has drastically increased
over the past few years, little is known on the the time-evolution of shapes and
the underlying physical processes. One apparent common feature of these shapes
is the existence of large, relatively flat areas separated by edges. Here we
propose a simple abrasion model based on multiple collisions with small objects,
which accounts for the emergence of such polyhedral shapes. We show that the
model is realistic, since the bulk of the collisions falls into this category.
We point out other effects, not captured by our model as well as an analogy to
pebble shapes.
|
Gabor Domokos |
12:00-12:30 |
Stable manifolds as thresholds for multipulse excitability |
Details
Pablo Aguirre
(Joint work with Bernd Krauskopf and Hinke Osinga)
Abstract:
Invariant manifolds of saddle-type equilibria and periodic orbits are a key
ingredient to understand the global dynamics in many applied vector fields. They
act as boundaries that organize the overall dynamics in phase space [1]. While
it is fairly easy to study the related one-dimensional objects, the same is not
true for (un)stable manifolds of higher dimension. These manifolds can now be
computed with high accuracy with numerical methods based on continuation of
orbit segments, defined as solutions of suitable boundary value problems [1, 4].
As an example we consider a model for a laser with optical injection [6]. Under
certain conditions, the laser dynamics presents excitable behavior just before
the creation of a homoclinic orbit to a saddle-focus p (also known as Shilnikov
homoclinic [3, 5]). The two-dimensional stable manifold Ws(p) of this
equilibrium becomes an excitability threshold for the laser. A small
perturbation above Ws(p) makes an
excursion following the unstable manifold Wu(p)
before converging to an attractor q, originating a pulse-like response in the
state variables. Multipulse behavior is also possible, meaning several pulses or
responses are generated from a single perturbation above this boundary.
Implementing our calculations with AUTO [2] we show the topological and
geometrical changes the two-dimensional stable manifold Ws(p)
undergoes through a Shilnikov homoclinic bifurcation. In this way, we are able
to understand how the phase space from the laser dynamics is organized.
|
Pablo Aguirre |
Demonstration
Time |
Title |
Details |
Demonstrator |
12:30-13:00 |
|
Details
Harry Dankowicz
Abstract:
This demonstration illustrates the fundamental elements of the constructor
formalism of the continuation package COCO and its support of task embedding --
the shared responsibility for formulating and processing an extended
continuation problem across several toolboxes. Examples demonstrate a wide range
of functionality and adaptability, including flexible event handling,
continuation of sets of constrained trajectory segments and the associated
variational problem, and multi-dimensional manifold covering.
|
Harry Dankowicz |
Acknowledgments

This workshop is supported by the
Applied Mathematics Laboratory of the
Centre de Recherches Mathématiques (CRM),
Montreal, Canada; by the Centre for
Applied Mathematics in Bioscience and Medicine (CAMBAM), McGill University,
Montreal, Canada; and by the Aid to Research Related Events Programme of the
Office of the Vice-President, Research and Graduate Studies of Concordia
University.
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